So, Warp Drive was just acquired by Revolution Medicines. It was unfortunately not an acquisition based on strength, but both of the companies are Third Rock companies, and I have high regard for Third Rock, so hopefully the Warp Technology will survive. Warp was also co-founded by George Church, who trained me, Continue reading “Small Molecules that Plays an Antibody on TV”
Other than surgery, drugs are mainstays of disease therapy. We take chemicals to treat ourselves, but why is that? Why chemical, as opposed to light, ultrasound, electricity, odors, or some other type of intervention? The reason is that plants, from which most of our drugs come, have spent millions of years engaged in medicinal chemistry, and have created some of the most potent biological molecules.
But there are exceptions. For example, one group at Harvard recently published that exposing mice to flashing lights cleared beta amyloid plaque in the brain. This was likely because the flashing light drove gamma oscillations in the brain. Continue reading “Beyond Drugs”
Today, I ran across someone on LinkedIn who has the best grasp of declining R&D productivity from a macro level that I’ve ever seen. Kelvin Scott has a series of very insightful articles such as the ones below and a fantastic presentation.
I highly recommend you take a look though he’s more pessimistic than is warranted (he thinks that the industry is doomed). Many of his observations are on the mark, in that things cannot continue on the same trajectory. In my view, that means that they won’t–I think there will be structural changes in pharmaceutical R&D that will reverse the trends, because no one is going to be able to run companies forever with a negative return on investment.
For example, he discusses how there are too many companies chasing the same target that drives ROI down for everyone. That is probably true, and of course that means that eventually some of the companies will go out of business. When that happens, returns will rebound.
There was recent article in Nature Reviews Drug Discovery entitled “Small molecules against RNA targets attract big backers.” The article described several molecules that came out phenotypic screeening programs at Novartis, Merck, and Pfizer. These molecules target RNA instead of protein. “This was a huge surprise to us,” says RAjeev Sivasankaranm head of neurosciences group at Novartis. The group had been trying for years to figure out how a small molecule LMI070 works.
It should have been no surprise. RNA is turning out to be far more important than protein in cellular biology. I suspect that many of the molecules we currently think work through proteins will turn out to actually work through RNA. And many of the molecules where we have been unable to explain the mechanism of action (and there are many, including gold), will turn out to work via RNA.
Since we used to think protein was the most important class of target for drugs, we forced most of the molecules into that paradigm. Now that it’s becoming clear that this is not the case, our understanding of the drugs’ mechanism of action are being transformed.
You know those people who only need 4 hours of sleep a night, yet who are energetic to the point of making you feel exhausted just by seeing what they do in a day? Well, there’s an app for that. OK, not really, but there is a gene for that. It’s called DEC2 (also called BHLHE41), and the evidence for it is pretty convincing. The group that originally identified this gene even made mice with a mutation in the gene and the mice also became short sleepers, and at least one other group has identified mutations subsequently in the same gene in other families with short sleep phenomenon.
What does this gene do, can I have a copy of that mutation, you are asking yourself. Continue reading “To Sleep, Perchance to Dream… Or Not”
The bacteria called Fusobacterium nucleatum plays an important role in causing gingivitis and periodontal disease. It is also found in the placenta. Gingivitis is an interesting disease, because people who have gingivitis also tend to have higher risk of a number of other problems, such as diabetes and heart disease. It has been a long-running debate whether gingivitis causes these other diseases or whether it’s just a non-causal correlation.
Into that debate drops this bombshell: a paper recently published in Nature just reported that Fusobacterium, which was previously reported to be found in many patients with colon cancer and to induce tumors (in this paper, they show the bacteria recruit immune cells to the tumor, which is very very bad Continue reading “Colon Cancer and Bacteria”
There is a fantastic post by luysii on his Chemiotics II blog. In it, he discusses his theory that senescent cell may be producing mediators that cause chronic fatigue syndrome (CFS). I think it’s a fascinating idea.
CFS is a terrible disease, made worse by the fact that some physicians don’t believe that it exists. Trust me, it does.
An interesting things about the disease is that it tend to occur in high income countries, and almost never in developing countries, and that in my experience, it tends to occur in women from mid to higher socioeconomic strata. This is in contrast to fibromyalgia, which Continue reading “Being Sleepy and Tired”